Content
- Related proteins
- Ortholog cluster
- Related non-plant proteins
ARAMEMNON rel. 7.0
November 2010
© Flügge Lab
Botanical Institute
University of Cologne
What it is
ARAMEMNON is a database about plant membrane proteins with Arabidopsis thaliana as reference model plant. Currently, the database holds all putative membrane proteins of six plant species.
-
Dicotyledons
- Thale Cress (Arabidopsis thaliana), general model plant
- Grape (Vitis vinifera)
- Western Poplar (Populus trichocarpa)
-
Monocotyledons
- Rice (Oryza sativa)
- Maize (Zea mays)
- Brachypodium (Brachypodium distachyon), grass model plant
Above all, the database uses Arabidopsis thaliana as reference model plant, i.e. it contains not only the membrane proteins but all proteins of Arabidopsis thaliana.
Data in ARAMEMNON
ARAMEMNON stores data about
-
Protein description
- manually curated protein descriptions
- regularly updated bibliographic references
-
Sequence data and predictions
- protein, cDNA, genomic sequence and exon prediction
- conserved domains (PFAM database)
-
Protein topology predictions
- predictions for transmembrane spanning proteins
- predictions for posttranslational lipid modifications
- predictions of the subcellular location
-
Relationships to homologous proteins
- ortholog clusters of homologous protein sequences
- cladograms of homologous protein sequences