Current release 8.1
- Minor update --- January 03 - 2022
- Updated protein sequence conserved domains (PFAM 35.0, Nov 2021)
- Minor update --- June 17 - 2020
- Updated protein sequence conserved domains (PFAM 33.1, Mar 2020)
- Minor update --- July 04 - 2017
- Updated protein sequence conserved domains (PFAM 31.0, Mar 2017)
- Minor update --- February 06 - 2016
- Prediction of protein nucleus localization
- Updated protein sequence conserved domains (PFAM 29.0, Dec 2015)
Previous releases
-
release 8.0 October-20-2013
- new membrane protein data for tomato, muskmelon and banana
- browser for plant permeome proteins
- browser for components of plant membrane protein complexes
- TM alpha helix span prediction by PHILIUS
- signal peptide predictions by SignalP_v4.1 (replacing SignalP_v3 predictions)
- updated protein sequence conserved domains (PFAM 27.0, March 2013)
-
release 7.0 November-12-2010
- Minor update --- October 24 - 2011
- GPI-attachment predictions by FragAnchor and PredGPI
- Minor update --- May 25 - 2011
- updated conserved protein domains according to PFAM 25.0 (March 2011)
- Major update --- November 12 - 2010
- putative membrane proteins of Brachypodium distachyon grass model plant
- putative membrane proteins of Populus trichocarpa
- completely revised clustering of protein sequences
- Minor update --- October 24 - 2011
-
release 6.2 February-24-2010
- extended prediction results of posttranslational lipid modifications
- preview and search of subcellular location
- additional alpha helix TM prediction (Scampi) and revised TM consensus prediction
-
release 6.1 November-18-2009
- additional cladograms including orthologous proteins
- completely revised clustering of protein sequences
- update of conserved protein domains according to PFAM database 24.0 (Oct 2009)
-
release 6.0 August-21-2009
- Vitis vinifera and Zea mays putative membrane proteins
- new view of ortholog clusters
- Arabidopsis thaliana protein assembly TAIR v.9 replaces TAIR v.8
- Oryza sativa protein assembly MSU v.6 replaces TIGR v.5
-
release 5.2 July-15-2008
- Arabidopsis thaliana protein assembly TAIR v.8 replaces TAIR v.7
- additional membrane proteins of grape (~1400 new entries from UniProt)
- additional membrane proteins of other seed plants (~600 new entries from UniProt)
- completely revised cladogram trees and clustering of related proteins
-
release 5.0 August-08-2007
- Oryza sativa protein assembly TIGR v.5 replaces TIGR v.4
- Arabidopsis thaliana protein assembly TAIR v.7 replaces TAIR v.6
- membrane-anchored proteins: predictions of prenylation and myristoylation site
- additional predictions of the subcellular location (MultiLoc, SLP-local, PA-Sub)
- improved built-in consensus predictions for TM alpha helices and subcellular location
-
release 4.0 June-14-2006
- Arabidopsis thaliana protein assembly TAIR v.6 replaces TIGR v.5
- Oryza sativa protein assembly TIGR v.4 replaces TIGR v.3
- different cDNA / protein models (including splice variants) for A.thaliana and O.sativa
- additional proteins of other seed plants (~700 new entries from UniProt)
- subcellular location with additional individual predictions
-
release 3.2 August-15-2005
- search engine supporting several query features
- simple phylogenetic tree view of related proteins (replaces previous cluster view)
- protein sequence motifs as predictable by using the PFAM database
-
release 3.0 May-21-2005
- updated Rice cDNA/protein sequences (TIGR version 3) and predictions
- integrated ~4200 putative membrane proteins of more than 250 other seed plant species
- additional TM alpha helices predictions (SVMtm, TMMOD, S-Tmhmm, DAS-TMfilter)
-
release 2.2 November-18-2004
- updated Rice cDNA/protein sequences (TIGR version 2)
- including membrane proteins encoded by the organellar genomes
- including membrane beta sheet proteins and GPI membrane-anchored proteins
- additional predictions for TM alpha helices (Phobius) and targeting peptide (Mitopred)
- additional external consensus prediction (Conpred_II) for TM alpha helices
-
release 2.0 March-12-2004
- predictions for rice membrane proteins
- updated Arabidopsis cDNA/protein sequences as published by TIGR in January 2004
- modified consensus TM region prediction based on weighted single predictions
-
release 1.6 October-29-2003
- transporter classification according to the Transport Commission (TC) system
- term assignments according to the Gene Ontology (GO) Consortium
-
release 1.5 August-19-2003
- additional super consensus TM segment balance for related proteins
- extended consensus TM segment prediction
-
release 1.4 June-17-2003
- updated Arabidopsis cDNA/protein sequences as published by TIGR in April 2003
- additional TM region predictions by two programs (PHDhtm, THUMBUP)
- consensus TM region prediction based on all 11 single predictions
- custom-built multiple TM region alignments of related proteins
-
release 1.2 March-11-2003
- additional transmembrane predictions by three programs (MemSat, Alom2, PredTmr)
- transmembrane prediction details with hydropathy profile
- custom-built multiple sequence alignments of related proteins
First public release October-11-2002